No. words: 734; after pruning: 708


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)   49   -3.5 -3.5 (1,1:185)   66 16.30 0.00 0.00  BM140368Ld02P067G03P067G091F1_058.ab1       50   184 (221)  C BM140368Ld02P067G03P067G091R1_058.ab1   (192)   137     3 *
  Worst pair: offset 0 
LLR breakdown: discreps: -4.3 (<20 part: -4.3 (#=22), >20:0.0 (#=0); in HQ: -4.3, out HQ 0.0), match: 2.5  trail: 0.0  lead: -1.8  total: -3.6   66 16.30 0.00 0.00  BM140368Ld02P067G03P067G091F1_058.ab1       50   184 (221)  C BM140368Ld02P067G03P067G091R1_058.ab1   (192)   137     3 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.5       1        0

Gap   # merges  # failures
 size
49       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  30 nodes

 17 str. conn. components

Path
    1  C BM140368Ld02P067G03P067G091R1_058.ab1   329 
  196    BM140368Ld02P067G03P067G091F1_058.ab1    53 
  221  C BM140368Ld02P067G03P067G091R1_058.ab1   109 
  233    BM140368Ld02P067G03P067G091F1_058.ab1    90 
  260  C BM140368Ld02P067G03P067G091R1_058.ab1    70 
  284    BM140368Ld02P067G03P067G091F1_058.ab1   141 
  292  C BM140368Ld02P067G03P067G091R1_058.ab1    38 
  296    BM140368Ld02P067G03P067G091F1_058.ab1   153 
Contig length: old 548, new 548

Contig length: old 548, new 548
New start: 0 
S Change at: 250; seg lengths: entry 7, contig 7
S Change at: 303; seg lengths: entry 3, contig 3
S Change at: 315; seg lengths: entry 4, contig 4