No. words: 1172; after pruning: 1146


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.8 (1,1:279)  265  0.71 0.00 0.00  BM140368Ld13P067G03P067G091F1_056.ab1        1   280 (278)  C BM140368Ld13P067G03P067G091R1_056.ab1   (334)   280     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  138 nodes

 71 str. conn. components

Path
    1  C BM140368Ld13P067G03P067G091R1_056.ab1   614 
  394    BM140368Ld13P067G03P067G091F1_056.ab1    60 
  402  C BM140368Ld13P067G03P067G091R1_056.ab1   213 
  422    BM140368Ld13P067G03P067G091F1_056.ab1    88 
  506  C BM140368Ld13P067G03P067G091R1_056.ab1   109 
  530    BM140368Ld13P067G03P067G091F1_056.ab1   196 
Contig length: old 892, new 892

Contig length: old 892, new 892
New start: 0