No. words: 1193; after pruning: 1167


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:554)  550  0.00 0.00 0.18  BM140477Tu01P027C06P027C121F1_005.ab1        1   555 (42)  C BM140477Tu01P027C06P027C121R1_005.ab1   (42)   554     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  276 nodes

 140 str. conn. components

Path
    1  C BM140477Tu01P027C06P027C121R1_005.ab1   596 
   62    BM140477Tu01P027C06P027C121F1_005.ab1    20 
   66  C BM140477Tu01P027C06P027C121R1_005.ab1   531 
   70    BM140477Tu01P027C06P027C121F1_005.ab1    28 
  102  C BM140477Tu01P027C06P027C121R1_005.ab1   495 
  134    BM140477Tu01P027C06P027C121F1_005.ab1    92 
  142  C BM140477Tu01P027C06P027C121R1_005.ab1   455 
  146    BM140477Tu01P027C06P027C121F1_005.ab1   104 
  150  C BM140477Tu01P027C06P027C121R1_005.ab1   447 
  158    BM140477Tu01P027C06P027C121F1_005.ab1   116 
  162  C BM140477Tu01P027C06P027C121R1_005.ab1   435 
  170    BM140477Tu01P027C06P027C121F1_005.ab1   128 
  174  C BM140477Tu01P027C06P027C121R1_005.ab1   423 
  178    BM140477Tu01P027C06P027C121F1_005.ab1   136 
  202  C BM140477Tu01P027C06P027C121R1_005.ab1   395 
  206    BM140477Tu01P027C06P027C121F1_005.ab1   164 
  214  C BM140477Tu01P027C06P027C121R1_005.ab1   383 
  218    BM140477Tu01P027C06P027C121F1_005.ab1   176 
  234  C BM140477Tu01P027C06P027C121R1_005.ab1   363 
  250    BM140477Tu01P027C06P027C121F1_005.ab1   208 
  410  C BM140477Tu01P027C06P027C121R1_005.ab1   187 
  458    BM140477Tu01P027C06P027C121F1_005.ab1   416 
  462  C BM140477Tu01P027C06P027C121R1_005.ab1   135 
  474    BM140477Tu01P027C06P027C121F1_005.ab1   432 
  478  C BM140477Tu01P027C06P027C121R1_005.ab1   119 
  510    BM140477Tu01P027C06P027C121F1_005.ab1   468 
  514  C BM140477Tu01P027C06P027C121R1_005.ab1    83 
  534    BM140477Tu01P027C06P027C121F1_005.ab1   492 
  554  C BM140477Tu01P027C06P027C121R1_005.ab1    43 
  562    BM140477Tu01P027C06P027C121F1_005.ab1   520 
  566  C BM140477Tu01P027C06P027C121R1_005.ab1    31 
  570    BM140477Tu01P027C06P027C121F1_005.ab1   528 
Contig length: old 638, new 639

Contig length: old 639, new 639
New start: 0