No. words: 1206; after pruning: 1180


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 0.8 (1,1:567)  513  2.69 0.00 0.00  BM140477Tu02P027C06P027C121F1_006.ab1       11   568 (42)  C BM140477Tu02P027C06P027C121R1_006.ab1   (38)   558     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BM140477Tu02P027C06P027C121R1_006.ab1   596 
   42    BM140477Tu02P027C06P027C121F1_006.ab1    14 
  408  C BM140477Tu02P027C06P027C121R1_006.ab1   189 
  583    BM140477Tu02P027C06P027C121F1_006.ab1   555 
  587  C BM140477Tu02P027C06P027C121R1_006.ab1    10 
  591    BM140477Tu02P027C06P027C121F1_006.ab1   563 
Contig length: old 638, new 638

Contig length: old 638, new 638
New start: 0