No. words: 1312; after pruning: 1286


Histogram of relative pair offsets, for read pairs with multiple alignments:
99     6

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    6   -3.4 -3.4 (1,1:1112)   84 18.13 0.00 0.00  BQ160340As01P081F04P081F101F1_062.ab1      378   570 (6)  C BQ160340As01P081F04P081F101R1_062.ab1   (0)   736   544 *
  Worst pair: offset 0 
LLR breakdown: discreps: -6.6 (<20 part: -6.6 (#=35), >20:0.0 (#=0); in HQ: -6.6, out HQ 0.0), match: 3.5  trail: -0.4  total: -3.5   84 18.13 0.00 0.00  BQ160340As01P081F04P081F101F1_062.ab1      378   570 (6)  C BQ160340As01P081F04P081F101R1_062.ab1   (0)   736   544 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.4       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  32 nodes

 18 str. conn. components

Path
    1    BQ160340As01P081F04P081F101F1_062.ab1     1 
  381  C BQ160340As01P081F04P081F101R1_062.ab1   733 
  385    BQ160340As01P081F04P081F101F1_062.ab1   385 
  397  C BQ160340As01P081F04P081F101R1_062.ab1   717 
  472    BQ160340As01P081F04P081F101F1_062.ab1   472 
  476  C BQ160340As01P081F04P081F101R1_062.ab1   638 
  493    BQ160340As01P081F04P081F101F1_062.ab1   493 
  519  C BQ160340As01P081F04P081F101R1_062.ab1   595 
Contig length: old 1113, new 1113

Contig length: old 1113, new 1113
New start: 0 
S Change at: 423; seg lengths: entry 4, contig 4
S Change at: 431; seg lengths: entry 4, contig 4
S Change at: 484; seg lengths: entry 1, contig 1
S Change at: 511; seg lengths: entry 4, contig 4
S Change at: 533; seg lengths: entry 1, contig 1
S Change at: 566; seg lengths: entry 1, contig 1