No. words: 305; after pruning: 279


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.9 -3.9 (1,1:104)   49 17.14 0.00 0.00  BQ162650Ld10P067E03P067E091F1_078.ab1        1   105 (59)  C BQ162650Ld10P067E03P067E091R1_078.ab1   (36)   105     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -5.9 (<20 part: -5.9 (#=18), >20:0.0 (#=0); in HQ: -5.9, out HQ 0.0), match: 1.9  total: -4.0   49 17.14 0.00 0.00  BQ162650Ld10P067E03P067E091F1_078.ab1        1   105 (59)  C BQ162650Ld10P067E03P067E091R1_078.ab1   (36)   105     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.9       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  16 nodes

 10 str. conn. components

Path
    1  C BQ162650Ld10P067E03P067E091R1_078.ab1   141 
   51    BQ162650Ld10P067E03P067E091F1_078.ab1    15 
   55  C BQ162650Ld10P067E03P067E091R1_078.ab1    87 
  136    BQ162650Ld10P067E03P067E091F1_078.ab1   100 
Contig length: old 200, new 200

Contig length: old 200, new 200
New start: 0 
S Change at: 94; seg lengths: entry 4, contig 4