No. words: 1052; after pruning: 1026


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:482)  466  0.00 0.00 0.21  BQ483083At02P081A06P081A121F1_073.ab1        1   483 (36)  C BQ483083At02P081A06P081A121R1_073.ab1   (51)   482     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C BQ483083At02P081A06P081A121R1_073.ab1   533 
   87    BQ483083At02P081A06P081A121F1_073.ab1    36 
   91  C BQ483083At02P081A06P081A121R1_073.ab1   443 
  103    BQ483083At02P081A06P081A121F1_073.ab1    52 
  107  C BQ483083At02P081A06P081A121R1_073.ab1   427 
  111    BQ483083At02P081A06P081A121F1_073.ab1    60 
  119  C BQ483083At02P081A06P081A121R1_073.ab1   415 
  123    BQ483083At02P081A06P081A121F1_073.ab1    72 
  127  C BQ483083At02P081A06P081A121R1_073.ab1   407 
  131    BQ483083At02P081A06P081A121F1_073.ab1    80 
  143  C BQ483083At02P081A06P081A121R1_073.ab1   391 
  147    BQ483083At02P081A06P081A121F1_073.ab1    96 
  163  C BQ483083At02P081A06P081A121R1_073.ab1   371 
  167    BQ483083At02P081A06P081A121F1_073.ab1   116 
  175  C BQ483083At02P081A06P081A121R1_073.ab1   359 
  183    BQ483083At02P081A06P081A121F1_073.ab1   132 
  219  C BQ483083At02P081A06P081A121R1_073.ab1   315 
  331    BQ483083At02P081A06P081A121F1_073.ab1   280 
  343  C BQ483083At02P081A06P081A121R1_073.ab1   191 
  427    BQ483083At02P081A06P081A121F1_073.ab1   376 
  439  C BQ483083At02P081A06P081A121R1_073.ab1    95 
  443    BQ483083At02P081A06P081A121F1_073.ab1   392 
  451  C BQ483083At02P081A06P081A121R1_073.ab1    83 
  467    BQ483083At02P081A06P081A121F1_073.ab1   416 
  475  C BQ483083At02P081A06P081A121R1_073.ab1    59 
  483    BQ483083At02P081A06P081A121F1_073.ab1   432 
  487  C BQ483083At02P081A06P081A121R1_073.ab1    47 
  495    BQ483083At02P081A06P081A121F1_073.ab1   444 
Contig length: old 569, new 570

Contig length: old 570, new 570
New start: 0