No. words: 1204; after pruning: 1178


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.6 (1,1:483)  470  0.21 0.00 0.00  BQ483083Ld02P081A06P081A121F1_091.ab1        1   484 (186)  C BQ483083Ld02P081A06P081A121R1_091.ab1   (50)   484     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C BQ483083Ld02P081A06P081A121R1_091.ab1   534 
   67    BQ483083Ld02P081A06P081A121F1_091.ab1    17 
   71  C BQ483083Ld02P081A06P081A121R1_091.ab1   464 
   86    BQ483083Ld02P081A06P081A121F1_091.ab1    36 
Contig length: old 720, new 720

Contig length: old 720, new 720
New start: 0