No. words: 1282; after pruning: 1256


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.6 (1,1:480)  463  0.00 0.00 0.21  BQ483083Ld05P081A06P081A121F2_083.ab1        1   481 (139)  C BQ483083Ld05P081A06P081A121R2_083.ab1   (182)   480     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C BQ483083Ld05P081A06P081A121R2_083.ab1   662 
  242    BQ483083Ld05P081A06P081A121F2_083.ab1    60 
  250  C BQ483083Ld05P081A06P081A121R2_083.ab1   413 
  270    BQ483083Ld05P081A06P081A121F2_083.ab1    88 
  274  C BQ483083Ld05P081A06P081A121R2_083.ab1   389 
  278    BQ483083Ld05P081A06P081A121F2_083.ab1    96 
  290  C BQ483083Ld05P081A06P081A121R2_083.ab1   373 
  298    BQ483083Ld05P081A06P081A121F2_083.ab1   116 
  306  C BQ483083Ld05P081A06P081A121R2_083.ab1   357 
  310    BQ483083Ld05P081A06P081A121F2_083.ab1   128 
  342  C BQ483083Ld05P081A06P081A121R2_083.ab1   321 
  350    BQ483083Ld05P081A06P081A121F2_083.ab1   168 
  514  C BQ483083Ld05P081A06P081A121R2_083.ab1   149 
  526    BQ483083Ld05P081A06P081A121F2_083.ab1   344 
  542  C BQ483083Ld05P081A06P081A121R2_083.ab1   121 
  554    BQ483083Ld05P081A06P081A121F2_083.ab1   372 
  562  C BQ483083Ld05P081A06P081A121R2_083.ab1   101 
  566    BQ483083Ld05P081A06P081A121F2_083.ab1   384 
  578  C BQ483083Ld05P081A06P081A121R2_083.ab1    85 
  582    BQ483083Ld05P081A06P081A121F2_083.ab1   400 
  586  C BQ483083Ld05P081A06P081A121R2_083.ab1    77 
  594    BQ483083Ld05P081A06P081A121F2_083.ab1   412 
  602  C BQ483083Ld05P081A06P081A121R2_083.ab1    61 
  610    BQ483083Ld05P081A06P081A121F2_083.ab1   428 
  614  C BQ483083Ld05P081A06P081A121R2_083.ab1    49 
  618    BQ483083Ld05P081A06P081A121F2_083.ab1   436 
Contig length: old 801, new 802

Contig length: old 802, new 802
New start: 0