No. words: 1046; after pruning: 1020


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.8 (1,1:477)  456  0.21 0.00 0.21  BQ483083Tu01P081A06P081A121F1_052.ab1        1   478 (35)  C BQ483083Tu01P081A06P081A121R1_052.ab1   (56)   477     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C BQ483083Tu01P081A06P081A121R1_052.ab1   533 
   60    BQ483083Tu01P081A06P081A121F1_052.ab1     4 
   64  C BQ483083Tu01P081A06P081A121R1_052.ab1   470 
   68    BQ483083Tu01P081A06P081A121F1_052.ab1    12 
  382  C BQ483083Tu01P081A06P081A121R1_052.ab1   152 
  510    BQ483083Tu01P081A06P081A121F1_052.ab1   454 
Contig length: old 568, new 569

Contig length: old 569, new 569
New start: 0