No. words: 2786; after pruning: 2720


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      4

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:-4)  470  1.78 0.00 0.20  CD373557As01P067C03P067C091F1_010.ab1        1   506 (0)    CD373557As01P067C03P067C091F1_039.ab1        6   510 (320) *
Merge:(0)    0    0.0 7.2 (1,1:-8)  551  3.33 0.32 0.32  CD373557As01P067C03P067C091R1_010.ab1        1   630 (0)    CD373557As01P067C03P067C091R1_039.ab1       10   639 (181) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       2        0

Gap   # merges  # failures
 size
 0       2        0

Offset
  0       2 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    2

Chimera merges: 


Contig 2:  250 nodes

 127 str. conn. components

Path
    1    CD373557As01P067C03P067C091R1_039.ab1     1 
Contig length: old 820, new 820

Contig 1:  226 nodes

 115 str. conn. components

Path
    1    CD373557As01P067C03P067C091F1_039.ab1     1 
Contig length: old 830, new 830

Contig length: old 820, new 820
New start: 0 

Contig length: old 830, new 830
New start: 0