No. words: 2185; after pruning: 2146


Histogram of relative pair offsets, for read pairs with multiple alignments:
41     4
82     2

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.6 (1,1:2)  532  0.37 0.00 0.00  CD373557At02P067C03P067C091F1_004.ab1        3   545 (0)    CD373557At02P067C03P067C091F1_033.ab1        1   543 (302) *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    1    1
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1    CD373557At02P067C03P067C091F1_004.ab1     1 
    6    CD373557At02P067C03P067C091F1_033.ab1     4 
   10    CD373557At02P067C03P067C091F1_004.ab1    10 
  106    CD373557At02P067C03P067C091F1_033.ab1   104 
  110    CD373557At02P067C03P067C091F1_004.ab1   110 
  202    CD373557At02P067C03P067C091F1_033.ab1   200 
  410    CD373557At02P067C03P067C091F1_004.ab1   410 
  426    CD373557At02P067C03P067C091F1_033.ab1   424 
Contig length: old 847, new 847

Contig length: old 847, new 847
New start: 0 
S Change at: 78; seg lengths: entry 1, contig 1