No. words: 1014; after pruning: 988


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:460)  448  0.00 0.22 0.00  CD452413At01P081C06P081C121F1_068.ab1        2   461 (42)  C CD452413At01P081C06P081C121R1_068.ab1   (50)   461     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  228 nodes

 116 str. conn. components

Path
    1  C CD452413At01P081C06P081C121R1_068.ab1   511 
   82    CD452413At01P081C06P081C121F1_068.ab1    32 
   86  C CD452413At01P081C06P081C121R1_068.ab1   426 
  358    CD452413At01P081C06P081C121F1_068.ab1   308 
Contig length: old 553, new 553

Contig length: old 553, new 553
New start: 0