No. words: 1260; after pruning: 1234


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:555)  513  1.08 0.18 0.00  CD452844At02P081E06P081E121F1_090.ab1        1   555 (65)  C CD452844At02P081E06P081E121R1_090.ab1   (84)   556     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C CD452844At02P081E06P081E121R1_090.ab1   640 
  511    CD452844At02P081E06P081E121F1_090.ab1   427 
  519  C CD452844At02P081E06P081E121R1_090.ab1   122 
  531    CD452844At02P081E06P081E121F1_090.ab1   447 
  559  C CD452844At02P081E06P081E121R1_090.ab1    82 
  567    CD452844At02P081E06P081E121F1_090.ab1   483 
Contig length: old 704, new 704

Contig length: old 704, new 704
New start: 0