No. words: 1496; after pruning: 1470


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.0 (1,1:562)  531  0.36 0.18 0.00  CD452844Ld01P081E06P081E121F1_092.ab1        1   562 (177)  C CD452844Ld01P081E06P081E121R1_092.ab1   (194)   563     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  274 nodes

 139 str. conn. components

Path
    1  C CD452844Ld01P081E06P081E121R1_092.ab1   757 
  268    CD452844Ld01P081E06P081E121F1_092.ab1    74 
  272  C CD452844Ld01P081E06P081E121R1_092.ab1   486 
  532    CD452844Ld01P081E06P081E121F1_092.ab1   338 
  536  C CD452844Ld01P081E06P081E121R1_092.ab1   222 
  544    CD452844Ld01P081E06P081E121F1_092.ab1   350 
  552  C CD452844Ld01P081E06P081E121R1_092.ab1   206 
  604    CD452844Ld01P081E06P081E121F1_092.ab1   410 
  620  C CD452844Ld01P081E06P081E121R1_092.ab1   138 
  636    CD452844Ld01P081E06P081E121F1_092.ab1   442 
  644  C CD452844Ld01P081E06P081E121R1_092.ab1   114 
  660    CD452844Ld01P081E06P081E121F1_092.ab1   466 
Contig length: old 933, new 933

Contig length: old 933, new 933
New start: 0