No. words: 1268; after pruning: 1242


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 7.4 (1,1:422)  380  1.21 0.00 0.00  CD452844Ld03P081E06P081E121F1_088.ab1       11   423 (137)  C CD452844Ld03P081E06P081E121R1_088.ab1   (295)   413     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C CD452844Ld03P081E06P081E121R1_088.ab1   708 
  310    CD452844Ld03P081E06P081E121F1_088.ab1    25 
  362  C CD452844Ld03P081E06P081E121R1_088.ab1   347 
  370    CD452844Ld03P081E06P081E121F1_088.ab1    85 
  466  C CD452844Ld03P081E06P081E121R1_088.ab1   243 
  470    CD452844Ld03P081E06P081E121F1_088.ab1   185 
Contig length: old 845, new 845

Contig length: old 845, new 845
New start: 0