No. words: 1541; after pruning: 1501


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.2 (1,1:614)  580  0.49 0.00 0.16  CD452844Ld05P081E06P081E121F1_084.ab1        1   615 (141)  C CD452844Ld05P081E06P081E121R1_084.ab1   (171)   614     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C CD452844Ld05P081E06P081E121R1_084.ab1   785 
  317    CD452844Ld05P081E06P081E121F1_084.ab1   147 
  329  C CD452844Ld05P081E06P081E121R1_084.ab1   457 
  345    CD452844Ld05P081E06P081E121F1_084.ab1   175 
  359  C CD452844Ld05P081E06P081E121R1_084.ab1   427 
  375    CD452844Ld05P081E06P081E121F1_084.ab1   205 
  379  C CD452844Ld05P081E06P081E121R1_084.ab1   407 
  443    CD452844Ld05P081E06P081E121F1_084.ab1   273 
  451  C CD452844Ld05P081E06P081E121R1_084.ab1   335 
  475    CD452844Ld05P081E06P081E121F1_084.ab1   305 
  479  C CD452844Ld05P081E06P081E121R1_084.ab1   307 
  495    CD452844Ld05P081E06P081E121F1_084.ab1   325 
  499  C CD452844Ld05P081E06P081E121R1_084.ab1   287 
  511    CD452844Ld05P081E06P081E121F1_084.ab1   341 
  523  C CD452844Ld05P081E06P081E121R1_084.ab1   263 
  527    CD452844Ld05P081E06P081E121F1_084.ab1   357 
  535  C CD452844Ld05P081E06P081E121R1_084.ab1   251 
  543    CD452844Ld05P081E06P081E121F1_084.ab1   373 
  563  C CD452844Ld05P081E06P081E121R1_084.ab1   223 
  607    CD452844Ld05P081E06P081E121F1_084.ab1   437 
  619  C CD452844Ld05P081E06P081E121R1_084.ab1   167 
  631    CD452844Ld05P081E06P081E121F1_084.ab1   461 
  671  C CD452844Ld05P081E06P081E121R1_084.ab1   115 
  675    CD452844Ld05P081E06P081E121F1_084.ab1   505 
  753  C CD452844Ld05P081E06P081E121R1_084.ab1    33 
  761    CD452844Ld05P081E06P081E121F1_084.ab1   591 
Contig length: old 926, new 926

Contig length: old 926, new 926
New start: 0 
S Change at: 86; seg lengths: entry 1, contig 1