No. words: 1539; after pruning: 1513


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:616)  596  0.00 0.00 0.00  CD452844Ld08P081E06P081E121F1_092.ab1        1   617 (139)  C CD452844Ld08P081E06P081E121R1_092.ab1   (166)   617     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C CD452844Ld08P081E06P081E121R1_092.ab1   783 
  638    CD452844Ld08P081E06P081E121F1_092.ab1   472 
  646  C CD452844Ld08P081E06P081E121R1_092.ab1   138 
  658    CD452844Ld08P081E06P081E121F1_092.ab1   492 
  674  C CD452844Ld08P081E06P081E121R1_092.ab1   110 
  678    CD452844Ld08P081E06P081E121F1_092.ab1   512 
  686  C CD452844Ld08P081E06P081E121R1_092.ab1    98 
  690    CD452844Ld08P081E06P081E121F1_092.ab1   524 
  702  C CD452844Ld08P081E06P081E121R1_092.ab1    82 
  718    CD452844Ld08P081E06P081E121F1_092.ab1   552 
  754  C CD452844Ld08P081E06P081E121R1_092.ab1    30 
  762    CD452844Ld08P081E06P081E121F1_092.ab1   596 
Contig length: old 922, new 922

Contig length: old 922, new 922
New start: 0