No. words: 1546; after pruning: 1520


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.8 (1,1:621)  599  0.00 0.00 0.00  CD452844Ld09P081E06P081E121F1_090.ab1        1   622 (134)  C CD452844Ld09P081E06P081E121R1_090.ab1   (168)   622     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C CD452844Ld09P081E06P081E121R1_090.ab1   790 
  640    CD452844Ld09P081E06P081E121F1_090.ab1   472 
  648  C CD452844Ld09P081E06P081E121R1_090.ab1   143 
  660    CD452844Ld09P081E06P081E121F1_090.ab1   492 
  680  C CD452844Ld09P081E06P081E121R1_090.ab1   111 
  692    CD452844Ld09P081E06P081E121F1_090.ab1   524 
  704  C CD452844Ld09P081E06P081E121R1_090.ab1    87 
  708    CD452844Ld09P081E06P081E121F1_090.ab1   540 
  728  C CD452844Ld09P081E06P081E121R1_090.ab1    63 
  732    CD452844Ld09P081E06P081E121F1_090.ab1   564 
  736  C CD452844Ld09P081E06P081E121R1_090.ab1    55 
  740    CD452844Ld09P081E06P081E121F1_090.ab1   572 
  756  C CD452844Ld09P081E06P081E121R1_090.ab1    35 
  764    CD452844Ld09P081E06P081E121F1_090.ab1   596 
Contig length: old 924, new 924

Contig length: old 924, new 924
New start: 0