No. words: 1551; after pruning: 1525


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.7 (1,1:621)  596  0.00 0.00 0.16  CD452844Ld12P081E06P081E121F1_084.ab1        1   622 (142)  C CD452844Ld12P081E06P081E121R1_084.ab1   (166)   621     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C CD452844Ld12P081E06P081E121R1_084.ab1   787 
  638    CD452844Ld12P081E06P081E121F1_084.ab1   472 
  646  C CD452844Ld12P081E06P081E121R1_084.ab1   142 
  658    CD452844Ld12P081E06P081E121F1_084.ab1   492 
  678  C CD452844Ld12P081E06P081E121R1_084.ab1   110 
  690    CD452844Ld12P081E06P081E121F1_084.ab1   524 
  698  C CD452844Ld12P081E06P081E121R1_084.ab1    90 
  706    CD452844Ld12P081E06P081E121F1_084.ab1   540 
  734  C CD452844Ld12P081E06P081E121R1_084.ab1    54 
  738    CD452844Ld12P081E06P081E121F1_084.ab1   572 
  754  C CD452844Ld12P081E06P081E121R1_084.ab1    34 
  758    CD452844Ld12P081E06P081E121F1_084.ab1   592 
Contig length: old 929, new 930

Contig length: old 930, new 930
New start: 0