No. words: 594; after pruning: 568


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    1   -3.7 -3.7 (1,1:205)   92 16.59 0.00 0.00  CD452844Td06P115G10P081E121F1_012.ab1        2   206 (43)  C CD452844Td06P115G10P081E121R1_012.ab1   (140)   205     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -7.5 (<20 part: -7.5 (#=34), >20:0.0 (#=0); in HQ: -7.5, out HQ 0.0), match: 3.8  lead: -0.1  total: -3.8   92 16.59 0.00 0.00  CD452844Td06P115G10P081E121F1_012.ab1        2   206 (43)  C CD452844Td06P115G10P081E121R1_012.ab1   (140)   205     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.7       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  40 nodes

 22 str. conn. components

Path
    1  C CD452844Td06P115G10P081E121R1_012.ab1   345 
  144    CD452844Td06P115G10P081E121F1_012.ab1     5 
  148  C CD452844Td06P115G10P081E121R1_012.ab1   198 
  156    CD452844Td06P115G10P081E121F1_012.ab1    17 
  160  C CD452844Td06P115G10P081E121R1_012.ab1   186 
  185    CD452844Td06P115G10P081E121F1_012.ab1    46 
  193  C CD452844Td06P115G10P081E121R1_012.ab1   153 
  247    CD452844Td06P115G10P081E121F1_012.ab1   108 
  251  C CD452844Td06P115G10P081E121R1_012.ab1    95 
  338    CD452844Td06P115G10P081E121F1_012.ab1   199 
Contig length: old 388, new 388

Contig length: old 388, new 388
New start: 0 
S Change at: 165; seg lengths: entry 1, contig 1
S Change at: 231; seg lengths: entry 3, contig 3
S Change at: 282; seg lengths: entry 5, contig 5
S Change at: 314; seg lengths: entry 10, contig 10