No. words: 1644; after pruning: 1618


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)   10    0.0 13.9 (1,1:737)  701  0.14 0.00 0.00  CD453612Ld02P081G06P081G121F1_009.ab1        4   728 (86)  C CD453612Ld02P081G06P081G121R1_009.ab1   (95)   735    11 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
10       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  356 nodes

 180 str. conn. components

Path
    1  C CD453612Ld02P081G06P081G121R1_009.ab1   830 
  107    CD453612Ld02P081G06P081G121F1_009.ab1    15 
  131  C CD453612Ld02P081G06P081G121R1_009.ab1   700 
  139    CD453612Ld02P081G06P081G121F1_009.ab1    47 
  255  C CD453612Ld02P081G06P081G121R1_009.ab1   576 
  271    CD453612Ld02P081G06P081G121F1_009.ab1   179 
  283  C CD453612Ld02P081G06P081G121R1_009.ab1   548 
  303    CD453612Ld02P081G06P081G121F1_009.ab1   211 
  615  C CD453612Ld02P081G06P081G121R1_009.ab1   216 
  691    CD453612Ld02P081G06P081G121F1_009.ab1   599 
  699  C CD453612Ld02P081G06P081G121R1_009.ab1   132 
  763    CD453612Ld02P081G06P081G121F1_009.ab1   671 
Contig length: old 906, new 906

Contig length: old 906, new 906
New start: 0