No. words: 1710; after pruning: 1670


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:693)  650  0.14 0.14 0.14  CD453612Ld04P081G06P081G121F1_005.ab1        1   694 (175)  C CD453612Ld04P081G06P081G121R1_005.ab1   (147)   694     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  340 nodes

 172 str. conn. components

Path
    1  C CD453612Ld04P081G06P081G121R1_005.ab1   841 
  197    CD453612Ld04P081G06P081G121F1_005.ab1    50 
  205  C CD453612Ld04P081G06P081G121R1_005.ab1   637 
  229    CD453612Ld04P081G06P081G121F1_005.ab1    82 
  233  C CD453612Ld04P081G06P081G121R1_005.ab1   609 
  241    CD453612Ld04P081G06P081G121F1_005.ab1    94 
  257  C CD453612Ld04P081G06P081G121R1_005.ab1   585 
  265    CD453612Ld04P081G06P081G121F1_005.ab1   118 
  289  C CD453612Ld04P081G06P081G121R1_005.ab1   553 
  297    CD453612Ld04P081G06P081G121F1_005.ab1   150 
  713  C CD453612Ld04P081G06P081G121R1_005.ab1   129 
  749    CD453612Ld04P081G06P081G121F1_005.ab1   602 
  753  C CD453612Ld04P081G06P081G121R1_005.ab1    89 
  765    CD453612Ld04P081G06P081G121F1_005.ab1   618 
  773  C CD453612Ld04P081G06P081G121R1_005.ab1    69 
  793    CD453612Ld04P081G06P081G121F1_005.ab1   646 
  815  C CD453612Ld04P081G06P081G121R1_005.ab1    26 
  819    CD453612Ld04P081G06P081G121F1_005.ab1   672 
Contig length: old 1016, new 1016

Contig length: old 1016, new 1016
New start: 0 
S Change at: 937; seg lengths: entry 1, contig 1