No. words: 1101; after pruning: 1075


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 10.1 (1,1:632)  447  0.00 0.00 0.00  CD453612Tu02P081G06P081G121F1_013.ab1      108   574 (1)  C CD453612Tu02P081G06P081G121R1_013.ab1   (0)   526    60 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1    CD453612Tu02P081G06P081G121F1_013.ab1     1 
  275  C CD453612Tu02P081G06P081G121R1_013.ab1   359 
  279    CD453612Tu02P081G06P081G121F1_013.ab1   279 
  399  C CD453612Tu02P081G06P081G121R1_013.ab1   235 
  407    CD453612Tu02P081G06P081G121F1_013.ab1   407 
  419  C CD453612Tu02P081G06P081G121R1_013.ab1   215 
  423    CD453612Tu02P081G06P081G121F1_013.ab1   423 
  427  C CD453612Tu02P081G06P081G121R1_013.ab1   207 
  435    CD453612Tu02P081G06P081G121F1_013.ab1   435 
  443  C CD453612Tu02P081G06P081G121R1_013.ab1   191 
Contig length: old 633, new 633

Contig length: old 633, new 633
New start: 0