No. words: 1128; after pruning: 1102


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    9    0.0 7.5 (1,1:518)  491  0.00 0.00 0.00  CD454852As02P081H06P081H121F1_014.ab1       10   519 (47)  C CD454852As02P081H06P081H121R1_014.ab1   (52)   510     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 9       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C CD454852As02P081H06P081H121R1_014.ab1   562 
  399    CD454852As02P081H06P081H121F1_014.ab1   356 
  407  C CD454852As02P081H06P081H121R1_014.ab1   156 
  435    CD454852As02P081H06P081H121F1_014.ab1   392 
  439  C CD454852As02P081H06P081H121R1_014.ab1   124 
  447    CD454852As02P081H06P081H121F1_014.ab1   404 
  459  C CD454852As02P081H06P081H121R1_014.ab1   104 
  471    CD454852As02P081H06P081H121F1_014.ab1   428 
  491  C CD454852As02P081H06P081H121R1_014.ab1    72 
  507    CD454852As02P081H06P081H121F1_014.ab1   464 
  519  C CD454852As02P081H06P081H121R1_014.ab1    44 
  523    CD454852As02P081H06P081H121F1_014.ab1   480 
Contig length: old 609, new 609

Contig length: old 609, new 609
New start: 0