No. words: 1386; after pruning: 1360


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 10.1 (1,1:537)  513  0.00 0.19 0.00  CD454852Ld03P081H06P081H121F1_016.ab1        5   538 (143)  C CD454852Ld03P081H06P081H121R1_016.ab1   (170)   535     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C CD454852Ld03P081H06P081H121R1_016.ab1   705 
  433    CD454852Ld03P081H06P081H121F1_016.ab1   266 
  437  C CD454852Ld03P081H06P081H121R1_016.ab1   269 
  549    CD454852Ld03P081H06P081H121F1_016.ab1   382 
  637  C CD454852Ld03P081H06P081H121R1_016.ab1    69 
  645    CD454852Ld03P081H06P081H121F1_016.ab1   478 
Contig length: old 848, new 848

Contig length: old 848, new 848
New start: 0