No. words: 1310; after pruning: 1284


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.1 (1,1:496)  474  0.20 0.00 0.00  CD454852Ld08P081H06P081H121F1_006.ab1        3   497 (145)  C CD454852Ld08P081H06P081H121R1_006.ab1   (173)   495     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  240 nodes

 122 str. conn. components

Path
    1  C CD454852Ld08P081H06P081H121R1_006.ab1   668 
  514    CD454852Ld08P081H06P081H121F1_006.ab1   343 
  518  C CD454852Ld08P081H06P081H121R1_006.ab1   151 
  558    CD454852Ld08P081H06P081H121F1_006.ab1   387 
Contig length: old 813, new 813

Contig length: old 813, new 813
New start: 0