No. words: 1032; after pruning: 1006


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.6 (1,1:757)  143  3.57 0.00 0.60  (UMN173F)_C01_BE399515Ld03P166C01P166C041F1_011.ab1        1   168 (0)  C (UMN173R)_C01_BE399515Ld03P166C01P166C041R1_011.ab1   (107)   757   591 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  66 nodes

 35 str. conn. components

Path
    1  C (UMN173R)_C01_BE399515Ld03P166C01P166C041R1_011.ab1   864 
  124    (UMN173F)_C01_BE399515Ld03P166C01P166C041F1_011.ab1    17 
  132  C (UMN173R)_C01_BE399515Ld03P166C01P166C041R1_011.ab1   733 
Contig length: old 864, new 864

Contig length: old 864, new 864
New start: 0