No. words: 1684; after pruning: 1658


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 17.6 (1,1:856)  809  0.36 0.00 0.00  (UMN173F)_H01_BE399515Ld08P166C01P166C041F1_001.ab1       34   857 (3)  C (UMN173R)_H01_BE399515Ld08P166C01P166C041R1_001.ab1   (0)   824     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1    (UMN173F)_H01_BE399515Ld08P166C01P166C041F1_001.ab1     1 
   49  C (UMN173R)_H01_BE399515Ld08P166C01P166C041R1_001.ab1   809 
   53    (UMN173F)_H01_BE399515Ld08P166C01P166C041F1_001.ab1    53 
  195  C (UMN173R)_H01_BE399515Ld08P166C01P166C041R1_001.ab1   663 
  199    (UMN173F)_H01_BE399515Ld08P166C01P166C041F1_001.ab1   199 
  263  C (UMN173R)_H01_BE399515Ld08P166C01P166C041R1_001.ab1   595 
  851    (UMN173F)_H01_BE399515Ld08P166C01P166C041F1_001.ab1   851 
Contig length: old 860, new 860

Contig length: old 860, new 860
New start: 0 
S Change at: 86; seg lengths: entry 1, contig 1