No. words: 1733; after pruning: 1707


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 18.1 (1,1:850)  839  0.24 0.00 0.00  (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1        1   851 (17)  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   (14)   851     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  422 nodes

 213 str. conn. components

Path
    1  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   865 
   18    (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1     4 
   58  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   808 
   62    (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1    48 
   90  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   776 
  104    (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1    90 
  124  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   742 
  128    (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1   114 
  172  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   694 
  180    (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1   166 
  204  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   662 
  208    (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1   194 
  240  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   626 
  500    (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1   486 
  516  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   350 
  524    (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1   510 
  532  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   334 
  628    (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1   614 
  632  C (UMN173R)_E02_BE399515Ld13P166C01P166C041R1_008.ab1   234 
  860    (UMN173F)_E02_BE399515Ld13P166C01P166C041F1_008.ab1   846 
Contig length: old 882, new 882

Contig length: old 882, new 882
New start: 0