No. words: 1595; after pruning: 1569


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:802)  722  0.14 0.00 0.00  (UMN173F)_F02_BE399515Ld14P166C01P166C041F1_006.ab1        1   731 (0)  C (UMN173R)_F02_BE399515Ld14P166C01P166C041R1_006.ab1   (61)   803    73 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1  C (UMN173R)_F02_BE399515Ld14P166C01P166C041R1_006.ab1   864 
   65    (UMN173F)_F02_BE399515Ld14P166C01P166C041F1_006.ab1     4 
  168  C (UMN173R)_F02_BE399515Ld14P166C01P166C041R1_006.ab1   697 
  176    (UMN173F)_F02_BE399515Ld14P166C01P166C041F1_006.ab1   115 
  212  C (UMN173R)_F02_BE399515Ld14P166C01P166C041R1_006.ab1   653 
  232    (UMN173F)_F02_BE399515Ld14P166C01P166C041F1_006.ab1   171 
  244  C (UMN173R)_F02_BE399515Ld14P166C01P166C041R1_006.ab1   621 
  256    (UMN173F)_F02_BE399515Ld14P166C01P166C041F1_006.ab1   195 
  288  C (UMN173R)_F02_BE399515Ld14P166C01P166C041R1_006.ab1   577 
  524    (UMN173F)_F02_BE399515Ld14P166C01P166C041F1_006.ab1   463 
  528  C (UMN173R)_F02_BE399515Ld14P166C01P166C041R1_006.ab1   337 
Contig length: old 864, new 864

Contig length: old 864, new 864
New start: 0 
S Change at: 95; seg lengths: entry 1, contig 1