No. words: 1069; after pruning: 1043


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    6    0.0 8.2 (1,1:491)  463  0.00 0.62 0.21  (UMN171F)_F03_BE443276As02P166D03P166D061F1_021.ab1        9   492 (52)  C (UMN171R)_F03_BE443276As02P166D03P166D061R1_021.ab1   (39)   486     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 6       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C (UMN171R)_F03_BE443276As02P166D03P166D061R1_021.ab1   525 
  152    (UMN171F)_F03_BE443276As02P166D03P166D061F1_021.ab1   118 
  212  C (UMN171R)_F03_BE443276As02P166D03P166D061R1_021.ab1   314 
  240    (UMN171F)_F03_BE443276As02P166D03P166D061F1_021.ab1   206 
Contig length: old 577, new 578

Contig length: old 578, new 578
New start: 0