No. words: 1082; after pruning: 1056


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.3 (1,1:502)  481  0.00 0.40 0.20  (UMN171F)_H03_BE443276At02P166D03P166D061F1_017.ab1        6   503 (39)  C (UMN171R)_H03_BE443276At02P166D03P166D061R1_017.ab1   (41)   499     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  244 nodes

 124 str. conn. components

Path
    1  C (UMN171R)_H03_BE443276At02P166D03P166D061R1_017.ab1   540 
  152    (UMN171F)_H03_BE443276At02P166D03P166D061F1_017.ab1   114 
Contig length: old 579, new 580

Contig length: old 580, new 580
New start: 0