No. words: 1212; after pruning: 1186


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:400)  388  0.00 0.50 0.00  (UMN172F)_B08_BE443276Ld04P166D03P166D061F1_062.ab1        1   400 (266)  C (UMN172R)_B08_BE443276Ld04P166D03P166D061R1_062.ab1   (144)   402     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  196 nodes

 100 str. conn. components

Path
    1  C (UMN172R)_B08_BE443276Ld04P166D03P166D061R1_062.ab1   546 
  439    (UMN172F)_B08_BE443276Ld04P166D03P166D061F1_062.ab1   293 
  499  C (UMN172R)_B08_BE443276Ld04P166D03P166D061R1_062.ab1    48 
  519    (UMN172F)_B08_BE443276Ld04P166D03P166D061F1_062.ab1   373 
Contig length: old 811, new 812

Contig length: old 812, new 812
New start: 0