No. words: 1320; after pruning: 1294


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 9.3 (1,1:505)  483  0.20 0.40 0.00  (UMN172F)_E08_BE443276Ld07P166D03P166D061F1_056.ab1        6   505 (171)  C (UMN172R)_E08_BE443276Ld07P166D03P166D061R1_056.ab1   (142)   502     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C (UMN172R)_E08_BE443276Ld07P166D03P166D061R1_056.ab1   644 
  254    (UMN172F)_E08_BE443276Ld07P166D03P166D061F1_056.ab1   115 
  266  C (UMN172R)_E08_BE443276Ld07P166D03P166D061R1_056.ab1   379 
  314    (UMN172F)_E08_BE443276Ld07P166D03P166D061F1_056.ab1   175 
  502  C (UMN172R)_E08_BE443276Ld07P166D03P166D061R1_056.ab1   143 
  506    (UMN172F)_E08_BE443276Ld07P166D03P166D061F1_056.ab1   367 
  522  C (UMN172R)_E08_BE443276Ld07P166D03P166D061R1_056.ab1   123 
  534    (UMN172F)_E08_BE443276Ld07P166D03P166D061F1_056.ab1   395 
Contig length: old 814, new 815

Contig length: old 815, new 815
New start: 0