No. words: 1284; after pruning: 1258


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:475)  452  0.42 0.21 0.42  (UMN172F)_F08_BE443276Ld08P166D03P166D061F1_054.ab1        1   477 (177)  C (UMN172R)_F08_BE443276Ld08P166D03P166D061R1_054.ab1   (154)   476     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  226 nodes

 115 str. conn. components

Path
    1  C (UMN172R)_F08_BE443276Ld08P166D03P166D061R1_054.ab1   630 
  251    (UMN172F)_F08_BE443276Ld08P166D03P166D061F1_054.ab1    96 
  263  C (UMN172R)_F08_BE443276Ld08P166D03P166D061R1_054.ab1   368 
  279    (UMN172F)_F08_BE443276Ld08P166D03P166D061F1_054.ab1   124 
  499  C (UMN172R)_F08_BE443276Ld08P166D03P166D061R1_054.ab1   132 
  515    (UMN172F)_F08_BE443276Ld08P166D03P166D061F1_054.ab1   360 
Contig length: old 808, new 809

Contig length: old 809, new 809
New start: 0