No. words: 1316; after pruning: 1290


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 8.9 (1,1:504)  480  0.00 0.40 0.20  (UMN172F)_G08_BE443276Ld09P166D03P166D061F1_052.ab1        9   505 (171)  C (UMN172R)_G08_BE443276Ld09P166D03P166D061R1_052.ab1   (142)   498     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C (UMN172R)_G08_BE443276Ld09P166D03P166D061R1_052.ab1   640 
  196    (UMN172F)_G08_BE443276Ld09P166D03P166D061F1_052.ab1    60 
  200  C (UMN172R)_G08_BE443276Ld09P166D03P166D061R1_052.ab1   441 
  208    (UMN172F)_G08_BE443276Ld09P166D03P166D061F1_052.ab1    72 
  212  C (UMN172R)_G08_BE443276Ld09P166D03P166D061R1_052.ab1   429 
  224    (UMN172F)_G08_BE443276Ld09P166D03P166D061F1_052.ab1    88 
  232  C (UMN172R)_G08_BE443276Ld09P166D03P166D061R1_052.ab1   409 
  252    (UMN172F)_G08_BE443276Ld09P166D03P166D061F1_052.ab1   116 
  264  C (UMN172R)_G08_BE443276Ld09P166D03P166D061R1_052.ab1   377 
  272    (UMN172F)_G08_BE443276Ld09P166D03P166D061F1_052.ab1   136 
  324  C (UMN172R)_G08_BE443276Ld09P166D03P166D061R1_052.ab1   317 
  332    (UMN172F)_G08_BE443276Ld09P166D03P166D061F1_052.ab1   196 
  500  C (UMN172R)_G08_BE443276Ld09P166D03P166D061R1_052.ab1   141 
  508    (UMN172F)_G08_BE443276Ld09P166D03P166D061F1_052.ab1   372 
  524  C (UMN172R)_G08_BE443276Ld09P166D03P166D061R1_052.ab1   117 
  548    (UMN172F)_G08_BE443276Ld09P166D03P166D061F1_052.ab1   412 
Contig length: old 811, new 812

Contig length: old 812, new 812
New start: 0