No. words: 1332; after pruning: 1306


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 8.4 (1,1:507)  474  0.40 0.60 0.20  (UMN172F)_H08_BE443276Ld10P166D03P166D061F1_050.ab1        1   503 (169)  C (UMN172R)_H08_BE443276Ld10P166D03P166D061R1_050.ab1   (150)   510     6 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  234 nodes

 119 str. conn. components

Path
    1  C (UMN172R)_H08_BE443276Ld10P166D03P166D061R1_050.ab1   660 
  250    (UMN172F)_H08_BE443276Ld10P166D03P166D061F1_050.ab1    97 
  282  C (UMN172R)_H08_BE443276Ld10P166D03P166D061R1_050.ab1   379 
  290    (UMN172F)_H08_BE443276Ld10P166D03P166D061F1_050.ab1   137 
  338  C (UMN172R)_H08_BE443276Ld10P166D03P166D061R1_050.ab1   323 
  350    (UMN172F)_H08_BE443276Ld10P166D03P166D061F1_050.ab1   197 
  514  C (UMN172R)_H08_BE443276Ld10P166D03P166D061R1_050.ab1   147 
  526    (UMN172F)_H08_BE443276Ld10P166D03P166D061F1_050.ab1   373 
Contig length: old 824, new 825

Contig length: old 825, new 825
New start: 0