No. words: 1308; after pruning: 1282


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:495)  477  0.00 0.40 0.20  (UMN172F)_A09_BE443276Ld11P166D03P166D061F1_079.ab1        1   496 (170)  C (UMN172R)_A09_BE443276Ld11P166D03P166D061R1_079.ab1   (145)   497     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C (UMN172R)_A09_BE443276Ld11P166D03P166D061R1_079.ab1   642 
  254    (UMN172F)_A09_BE443276Ld11P166D03P166D061F1_079.ab1   107 
  262  C (UMN172R)_A09_BE443276Ld11P166D03P166D061R1_079.ab1   381 
  270    (UMN172F)_A09_BE443276Ld11P166D03P166D061F1_079.ab1   123 
  562  C (UMN172R)_A09_BE443276Ld11P166D03P166D061R1_079.ab1    81 
  570    (UMN172F)_A09_BE443276Ld11P166D03P166D061F1_079.ab1   423 
Contig length: old 812, new 813

Contig length: old 813, new 813
New start: 0