No. words: 1077; after pruning: 1051


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:497)  476  0.20 0.40 0.20  (UMN171F)_C03_BE443276Tu01P166D03P166D061F1_027.ab1        1   498 (37)  C (UMN171R)_C03_BE443276Tu01P166D03P166D061R1_027.ab1   (43)   499     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  238 nodes

 121 str. conn. components

Path
    1  C (UMN171R)_C03_BE443276Tu01P166D03P166D061R1_027.ab1   542 
  152    (UMN171F)_C03_BE443276Tu01P166D03P166D061F1_027.ab1   107 
  160  C (UMN171R)_C03_BE443276Tu01P166D03P166D061R1_027.ab1   383 
  240    (UMN171F)_C03_BE443276Tu01P166D03P166D061F1_027.ab1   195 
  296  C (UMN171R)_C03_BE443276Tu01P166D03P166D061R1_027.ab1   247 
  304    (UMN171F)_C03_BE443276Tu01P166D03P166D061F1_027.ab1   259 
  428  C (UMN171R)_C03_BE443276Tu01P166D03P166D061R1_027.ab1   115 
  432    (UMN171F)_C03_BE443276Tu01P166D03P166D061F1_027.ab1   387 
Contig length: old 579, new 580

Contig length: old 580, new 580
New start: 0