No. words: 1078; after pruning: 1052


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.1 (1,1:498)  480  0.00 0.40 0.20  (UMN171F)_D03_BE443276Tu02P166D03P166D061F1_025.ab1        1   499 (38)  C (UMN171R)_D03_BE443276Tu02P166D03P166D061R1_025.ab1   (41)   500     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  242 nodes

 123 str. conn. components

Path
    1  C (UMN171R)_D03_BE443276Tu02P166D03P166D061R1_025.ab1   541 
  152    (UMN171F)_D03_BE443276Tu02P166D03P166D061F1_025.ab1   109 
  160  C (UMN171R)_D03_BE443276Tu02P166D03P166D061R1_025.ab1   382 
  204    (UMN171F)_D03_BE443276Tu02P166D03P166D061F1_025.ab1   161 
Contig length: old 579, new 580

Contig length: old 580, new 580
New start: 0