No. words: 1406; after pruning: 1380


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:540)  527  0.56 0.19 0.00  (UMN172F)_E09_BE443349Ld03P166E03P166E061F1_071.ab1        1   540 (171)  C (UMN172R)_E09_BE443349Ld03P166E03P166E061R1_071.ab1   (154)   541     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  266 nodes

 135 str. conn. components

Path
    1  C (UMN172R)_E09_BE443349Ld03P166E03P166E061R1_071.ab1   695 
  253    (UMN172F)_E09_BE443349Ld03P166E03P166E061F1_071.ab1    98 
  257  C (UMN172R)_E09_BE443349Ld03P166E03P166E061R1_071.ab1   439 
  265    (UMN172F)_E09_BE443349Ld03P166E03P166E061F1_071.ab1   110 
  329  C (UMN172R)_E09_BE443349Ld03P166E03P166E061R1_071.ab1   367 
  333    (UMN172F)_E09_BE443349Ld03P166E03P166E061F1_071.ab1   178 
  349  C (UMN172R)_E09_BE443349Ld03P166E03P166E061R1_071.ab1   347 
  357    (UMN172F)_E09_BE443349Ld03P166E03P166E061F1_071.ab1   202 
  377  C (UMN172R)_E09_BE443349Ld03P166E03P166E061R1_071.ab1   319 
  381    (UMN172F)_E09_BE443349Ld03P166E03P166E061F1_071.ab1   226 
  473  C (UMN172R)_E09_BE443349Ld03P166E03P166E061R1_071.ab1   223 
  477    (UMN172F)_E09_BE443349Ld03P166E03P166E061F1_071.ab1   322 
  513  C (UMN172R)_E09_BE443349Ld03P166E03P166E061R1_071.ab1   183 
  517    (UMN172F)_E09_BE443349Ld03P166E03P166E061F1_071.ab1   362 
Contig length: old 865, new 866

Contig length: old 866, new 866
New start: 0