No. words: 1400; after pruning: 1374


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.5 (1,1:540)  532  0.55 0.00 0.00  (UMN172F)_H10_BE443349Ld04P166E03P166E061F1_066.ab1        1   541 (177)  C (UMN172R)_H10_BE443349Ld04P166E03P166E061R1_066.ab1   (141)   541     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C (UMN172R)_H10_BE443349Ld04P166E03P166E061R1_066.ab1   682 
  452    (UMN172F)_H10_BE443349Ld04P166E03P166E061F1_066.ab1   311 
  500  C (UMN172R)_H10_BE443349Ld04P166E03P166E061R1_066.ab1   183 
  512    (UMN172F)_H10_BE443349Ld04P166E03P166E061F1_066.ab1   371 
  552  C (UMN172R)_H10_BE443349Ld04P166E03P166E061R1_066.ab1   131 
  568    (UMN172F)_H10_BE443349Ld04P166E03P166E061F1_066.ab1   427 
  584  C (UMN172R)_H10_BE443349Ld04P166E03P166E061R1_066.ab1    99 
  592    (UMN172F)_H10_BE443349Ld04P166E03P166E061F1_066.ab1   451 
Contig length: old 859, new 859

Contig length: old 859, new 859
New start: 0