No. words: 1405; after pruning: 1379


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:543)  530  0.55 0.18 0.00  (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1        1   543 (177)  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   (141)   544     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   685 
  263    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   121 
  291  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   395 
  299    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   157 
  303  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   383 
  311    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   169 
  315  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   371 
  335    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   193 
  343  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   343 
  359    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   217 
  387  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   299 
  403    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   261 
  435  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   251 
  463    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   321 
  503  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   183 
  511    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   369 
  539  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   147 
  551    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   409 
  559  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   127 
  567    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   425 
  575  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1   111 
  583    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   441 
  607  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1    79 
  611    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   469 
  639  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1    47 
  643    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   501 
  651  C (UMN172R)_A11_BE443349Ld05P166E03P166E061R1_095.ab1    35 
  659    (UMN172F)_A11_BE443349Ld05P166E03P166E061F1_095.ab1   517 
Contig length: old 861, new 862

Contig length: old 862, new 862
New start: 0