No. words: 1403; after pruning: 1377


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 10.9 (1,1:542)  521  0.74 0.18 0.18  (UMN172F)_D11_BE443349Ld08P166E03P166E061F1_089.ab1        1   543 (177)  C (UMN172R)_D11_BE443349Ld08P166E03P166E061R1_089.ab1   (140)   543     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1  C (UMN172R)_D11_BE443349Ld08P166E03P166E061R1_089.ab1   683 
  310    (UMN172F)_D11_BE443349Ld08P166E03P166E061F1_089.ab1   169 
  314  C (UMN172R)_D11_BE443349Ld08P166E03P166E061R1_089.ab1   370 
  458    (UMN172F)_D11_BE443349Ld08P166E03P166E061F1_089.ab1   317 
  462  C (UMN172R)_D11_BE443349Ld08P166E03P166E061R1_089.ab1   222 
  594    (UMN172F)_D11_BE443349Ld08P166E03P166E061F1_089.ab1   453 
  606  C (UMN172R)_D11_BE443349Ld08P166E03P166E061R1_089.ab1    78 
  610    (UMN172F)_D11_BE443349Ld08P166E03P166E061F1_089.ab1   469 
  618  C (UMN172R)_D11_BE443349Ld08P166E03P166E061R1_089.ab1    66 
  622    (UMN172F)_D11_BE443349Ld08P166E03P166E061F1_089.ab1   481 
  634  C (UMN172R)_D11_BE443349Ld08P166E03P166E061R1_089.ab1    50 
  638    (UMN172F)_D11_BE443349Ld08P166E03P166E061F1_089.ab1   497 
  650  C (UMN172R)_D11_BE443349Ld08P166E03P166E061R1_089.ab1    34 
  654    (UMN172F)_D11_BE443349Ld08P166E03P166E061F1_089.ab1   513 
  666  C (UMN172R)_D11_BE443349Ld08P166E03P166E061R1_089.ab1    19 
  670    (UMN172F)_D11_BE443349Ld08P166E03P166E061F1_089.ab1   529 
Contig length: old 860, new 861

Contig length: old 861, new 861
New start: 0