No. words: 1410; after pruning: 1384


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 10.9 (1,1:550)  531  0.73 0.18 0.00  (UMN172F)_E11_BE443349Ld09P166E03P166E061F1_087.ab1        3   550 (177)  C (UMN172R)_E11_BE443349Ld09P166E03P166E061R1_087.ab1   (134)   549     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  268 nodes

 136 str. conn. components

Path
    1  C (UMN172R)_E11_BE443349Ld09P166E03P166E061R1_087.ab1   683 
  569    (UMN172F)_E11_BE443349Ld09P166E03P166E061F1_087.ab1   436 
  573  C (UMN172R)_E11_BE443349Ld09P166E03P166E061R1_087.ab1   111 
  593    (UMN172F)_E11_BE443349Ld09P166E03P166E061F1_087.ab1   460 
  605  C (UMN172R)_E11_BE443349Ld09P166E03P166E061R1_087.ab1    79 
  609    (UMN172F)_E11_BE443349Ld09P166E03P166E061F1_087.ab1   476 
  649  C (UMN172R)_E11_BE443349Ld09P166E03P166E061R1_087.ab1    35 
  657    (UMN172F)_E11_BE443349Ld09P166E03P166E061F1_087.ab1   524 
  661  C (UMN172R)_E11_BE443349Ld09P166E03P166E061R1_087.ab1    23 
  665    (UMN172F)_E11_BE443349Ld09P166E03P166E061F1_087.ab1   532 
Contig length: old 859, new 860

Contig length: old 860, new 860
New start: 0