No. words: 1389; after pruning: 1363


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.1 (1,1:537)  524  0.56 0.19 0.00  (UMN172F)_A12_BE443349Ld12P166E03P166E061F1_096.ab1        1   537 (144)  C (UMN172R)_A12_BE443349Ld12P166E03P166E061R1_096.ab1   (170)   538     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C (UMN172R)_A12_BE443349Ld12P166E03P166E061R1_096.ab1   708 
  356    (UMN172F)_A12_BE443349Ld12P166E03P166E061F1_096.ab1   185 
  524  C (UMN172R)_A12_BE443349Ld12P166E03P166E061R1_096.ab1   185 
  540    (UMN172F)_A12_BE443349Ld12P166E03P166E061F1_096.ab1   369 
  552  C (UMN172R)_A12_BE443349Ld12P166E03P166E061R1_096.ab1   157 
  592    (UMN172F)_A12_BE443349Ld12P166E03P166E061F1_096.ab1   421 
  600  C (UMN172R)_A12_BE443349Ld12P166E03P166E061R1_096.ab1   109 
  628    (UMN172F)_A12_BE443349Ld12P166E03P166E061F1_096.ab1   457 
  672  C (UMN172R)_A12_BE443349Ld12P166E03P166E061R1_096.ab1    37 
  680    (UMN172F)_A12_BE443349Ld12P166E03P166E061F1_096.ab1   509 
Contig length: old 851, new 852

Contig length: old 852, new 852
New start: 0