No. words: 1781; after pruning: 1755


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 16.5 (1,1:983)  777  0.00 0.00 0.13  (UMN171F)_A05_BE443995As01P166G03P166H061F1_047.ab1      107   902 (1)  C (UMN171R)_A05_BE443995As01P166G03P166H061R1_047.ab1   (0)   878    84 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  396 nodes

 200 str. conn. components

Path
    1    (UMN171F)_A05_BE443995As01P166G03P166H061F1_047.ab1     1 
  338  C (UMN171R)_A05_BE443995As01P166G03P166H061R1_047.ab1   647 
  342    (UMN171F)_A05_BE443995As01P166G03P166H061F1_047.ab1   342 
  514  C (UMN171R)_A05_BE443995As01P166G03P166H061R1_047.ab1   471 
Contig length: old 984, new 984

Contig length: old 984, new 984
New start: 0