No. words: 1641; after pruning: 1615


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.7 (1,1:976)  652  0.00 0.00 0.00  (UMN171F)_B05_BE443995As02P166G03P166H061F1_045.ab1      115   778 (0)  C (UMN171R)_B05_BE443995As02P166G03P166H061R1_045.ab1   (0)   863   200 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  334 nodes

 169 str. conn. components

Path
    1    (UMN171F)_B05_BE443995As02P166G03P166H061F1_045.ab1     1 
  626  C (UMN171R)_B05_BE443995As02P166G03P166H061R1_045.ab1   352 
Contig length: old 977, new 977

Contig length: old 977, new 977
New start: 0