No. words: 1784; after pruning: 1758


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    5    0.0 16.7 (1,1:952)  800  0.00 0.12 0.24  (UMN171F)_C05_BE443995At01P166G03P166H061F1_043.ab1       17   842 (0)  C (UMN171R)_C05_BE443995At01P166G03P166H061R1_043.ab1   (6)   936   112 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 5       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  406 nodes

 205 str. conn. components

Path
    1    (UMN171F)_C05_BE443995At01P166G03P166H061F1_043.ab1     1 
  282  C (UMN171R)_C05_BE443995At01P166G03P166H061R1_043.ab1   672 
  302    (UMN171F)_C05_BE443995At01P166G03P166H061F1_043.ab1   302 
  330  C (UMN171R)_C05_BE443995At01P166G03P166H061R1_043.ab1   624 
  374    (UMN171F)_C05_BE443995At01P166G03P166H061F1_043.ab1   374 
  378  C (UMN171R)_C05_BE443995At01P166G03P166H061R1_043.ab1   576 
Contig length: old 953, new 953

Contig length: old 953, new 953
New start: 0